COAPS Virtual Library (Publications)

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COAPS researchers: please email new publications to librarian@coaps.fsu.edu for inclusion in the database.

COAPS annually produces numerous refereed publications, technical reports, and theses. Here a user can view a list of our recent (the current calendar year) publications or search for publications of interest. The search page provides a number of user selectable options. Many published abstracts, full manuscripts, and theses can be accessed in PDF format.

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	Author	Goni, G.; DeMaria, M.; Knaff, J.; Sampson, C.; Ginis, I.; Bringas, F.; Mavume, A.; Lauer, C.; Lin, I.I.; Ali, M.M.; Sandery, P.; Ramos-Buarque, S.; Kang, K.R.; Mehra, A.; Chassignet, E.; Halliwell, G.
	Title	Applications of Satellite-Derived Ocean Measurements to Tropical Cyclone Intensity Forecasting			Type	$loc['typeJournal Article']
	Year	2009	Publication	Oceanography	Abbreviated Journal	Oceanog.
	Volume	22	Issue	3	Pages	190-197
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1042-8275	ISBN		Medium
	Area		Expedition		Conference
	Funding				Approved	$loc['no']
	Call Number	COAPS @ mfield @			Serial	384
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	Author	Hurlburt, HE: Metzger, EJ; Richman, JG; Chassignet, EP; Drillet, Y; Hecht, MW; Le Galloudec, O; Shriver, JF; Xu, X; Zamudio, L
	Title	Dynamical Evaluation of Ocean Models Using the Gulf Stream as an Example			Type	$loc['typeBook Chapter']
	Year	2011	Publication	Operational Oceanography in the 21st Century	Abbreviated Journal
	Volume		Issue		Pages
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher	Springer	Place of Publication	Dordrecht	Editor	Schiller A., Brassington G.
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Funding				Approved	$loc['no']
	Call Number	COAPS @ mfield @			Serial	321
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	Author	Chassignet, EP
	Title	Isopycnic and Hybrid Ocean Modeling in the Context of GODAE			Type	$loc['typeBook Chapter']
	Year	2011	Publication	Operational Oceanography in the 21st Century	Abbreviated Journal
	Volume		Issue		Pages	263-293
	Keywords
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor	Schiller, A; Brassington, GB
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Funding				Approved	$loc['no']
	Call Number	COAPS @ mfield @			Serial	317
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	Author	LaCasce, J.H.; Escartin, J.; Chassignet, E.P.; Xu, X.
	Title	Jet instability over smooth, corrugated and realistic bathymetry			Type	$loc['typeJournal Article']
	Year	2018	Publication	Journal of Physical Oceanography	Abbreviated Journal	J. Phys. Oceanogr.
	Volume		Issue		Pages
	Keywords
	Abstract	The stability of a horizontally- and vertically-sheared surface jet is examined, with a focus on the vertical structure of the resultant eddies. Over a flat bottom, the instability is mixed baroclinic/barotropic, producing strong eddies at depth which are characteristically shifted downstream relative to the surface eddies. Baroclinic instability is suppressed over a large slope for retrograde jets (with a flow anti-parallel to topographic wave propagation), and to a lesser extent for prograde jets (with flow parallel to topographic wave propagation), as seen previously. In such cases, barotropic (lateral) instability dominates if the jet is sufficiently narrow. This yields surface eddies whose size is independent of the slope but proportional to the jet width. Deep eddies still form, forced by interfacial motion associated with the surface eddies, but they are weaker than under baroclinic instability and are vertically aligned with the surface eddies. A sinusoidal ridge acts similarly, suppressing baroclinic instability and favoring lateral instability in the upper layer. A ridge with a 1 km wavelength and an amplitude of roughly 10 m is sufficient to suppress baroclinic instability. Surveys of bottom roughness from bathymetry acquired with shipboard multibeam echosounding reveal that such heights are common, beneath the Kuroshio, the Antarctic Circumpolar Current and, to a lesser extent, the Gulf Stream. Consistent with this, vorticity and velocity cross sections from a 1/50° HYCOM simulation suggest that Gulf Stream eddies are vertically aligned, as in the linear stability calculations with strong topography. Thus lateral instability may be more common than previously thought, due to topography hindering vertical energy transfer.
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0022-3670	ISBN		Medium
	Area		Expedition		Conference
	Funding				Approved	$loc['no']
	Call Number	COAPS @ user @			Serial	998
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	Author	Stukel, M.R.; Biard, T.; Krause, J.W.; Ohman, M.D.
	Title	Large Phaeodaria in the twilight zone: Their role in the carbon cycle			Type	$loc['typeJournal Article']
	Year	2018	Publication	Association for the Sciences of Limnology and Oceanography	Abbreviated Journal
	Volume		Issue		Pages
	Keywords	Carbon cycle; Ocean; Twilight zone, Rhizarian measurements; Aulosphaeridae
	Abstract	Advances in in situ imaging allow enumeration of abundant populations of large Rhizarians that compose a substantial proportion of total mesozooplankton biovolume. Using a quasi-Lagrangian sampling scheme, we quantified the abundance, vertical distributions, and sinking‐related mortality of Aulosphaeridae, an abundant family of Phaeodaria in the California Current Ecosystem. Inter‐cruise variability was high, with average concentrations at the depth of maximum abundance ranging from < 10 to > 300 cells m−3, with seasonal and interannual variability associated with temperature‐preferences and regional shoaling of the 10°C isotherm. Vertical profiles showed that these organisms were consistently most abundant at 100�150 m depth. Average turnover times with respect to sinking were 4.7�10.9 d, equating to minimum in situ population growth rates of ~ 0.1�0.2 d−1. Using simultaneous measurements of sinking organic carbon, we find that these organisms could only meet their carbon demand if their carbon : volume ratio were ~ 1 μg C mm−3. This value is substantially lower than previously used in global estimates of rhizarian biomass, but is reasonable for organisms that use large siliceous tests to inflate their cross‐sectional area without a concomitant increase in biomass. We found that Aulosphaeridae alone can intercept > 20% of sinking particles produced in the euphotic zone before these particles reach a depth of 300 m. Our results suggest that the local (and likely global) carbon biomass of Aulosphaeridae, and probably the large Rhizaria overall, needs to be revised downwards, but that these organisms nevertheless play a major role in carbon flux attenuation in the twilight zone.
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	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Funding				Approved	$loc['yes']
	Call Number	COAPS @ user @			Serial	967
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	Author	Brassington, G.B.; Martin, M.J.; Tolman, H.L.; Akella, S.; Balmeseda, M.; Chambers, C.R.S.; Chassignet, E.; Cummings, J.A.; Drillet, Y.; Jansen, P.A.E.M.; Laloyaux, P.; Lea, D.; Mehra, A.; Mirouze, I.; Ritchie, H.; Samson, G.; Sandery, P.A.; Smith, G.C.; Suarez, M.; Todling, R.
	Title	Progress and challenges in short- to medium-range coupled prediction			Type	$loc['typeJournal Article']
	Year	2015	Publication	Journal of Operational Oceanography	Abbreviated Journal	Journal of Operational Oceanography
	Volume	8	Issue	sup2	Pages	s239-s258
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	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	1755-876X	ISBN		Medium
	Area		Expedition		Conference
	Funding				Approved	$loc['no']
	Call Number	COAPS @ mfield @			Serial	96
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	Author	Stukel, M. R.; Song, H.; Goericke, R.; Miller, A.J.
	Title	The role of subduction and gravitational sinking in particle export, carbon sequestration, and the remineralization length scale in the California Current Ecosystem			Type	$loc['typeJournal Article']
	Year	2018	Publication	Limnology and Oceanography	Abbreviated Journal
	Volume	63	Issue	1	Pages	363-383
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	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN		ISBN		Medium
	Area		Expedition		Conference
	Funding				Approved	$loc['no']
	Call Number	COAPS @ mfield @			Serial	362
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	Author	Hiester, H.R.; Morey, S.L.; Dukhovskoy, D.S.; Chassignet, E.P.; Kourafalou, V.H.; Hu, C.
	Title	A topological approach for quantitative comparisons of ocean model fields to satellite ocean color data			Type	$loc['typeJournal Article']
	Year	2016	Publication	Methods in Oceanography	Abbreviated Journal	Methods in Oceanography
	Volume	17	Issue		Pages	232-250
	Keywords	Satellite data; Ocean model; Ocean color; Sea surface salinity; Shape comparison; Hausdorff distance
	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	2211-1220	ISBN		Medium
	Area		Expedition		Conference
	Funding				Approved	$loc['no']
	Call Number	COAPS @ mfield @			Serial	78
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	Author	Manghnani, V.; Morrison, J.M.; Xie, L.; Subrahmanyam, B.
	Title	Heat transports in the Indian Ocean estimated from TOPEX/POSEIDON altimetry and model simulations			Type	$loc['typeJournal Article']
	Year	2002	Publication	Deep Sea Research Part II: Topical Studies in Oceanography	Abbreviated Journal	Deep Sea Research Part II: Topical Studies in Oceanography
	Volume	49	Issue	7-8	Pages	1459-1480
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	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0967-0645	ISBN		Medium
	Area		Expedition		Conference
	Funding				Approved	$loc['no']
	Call Number	COAPS @ mfield @			Serial	832
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	Author	Thoppil, P.G.; Metzger, E.J.; Hurlburt, H.E.; Smedstad, O.M.; Ichikawa, H.
	Title	The current system east of the Ryukyu Islands as revealed by a global ocean reanalysis			Type	$loc['typeJournal Article']
	Year	2016	Publication	Progress in Oceanography	Abbreviated Journal	Progress in Oceanography
	Volume	141	Issue		Pages	239-258
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	Abstract
	Address
	Corporate Author				Thesis
	Publisher		Place of Publication		Editor
	Language		Summary Language		Original Title
	Series Editor		Series Title		Abbreviated Series Title
	Series Volume		Series Issue		Edition
	ISSN	0079-6611	ISBN		Medium
	Area		Expedition		Conference
	Funding				Approved	$loc['no']
	Call Number	COAPS @ mfield @			Serial	54
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