Armstrong, E. M., Bourassa, M. A., Cram, T., Elya, J. L., Greguska, F. R., III, Huang, T., et al. (2018). An information technology foundation for fostering interdisciplinary oceanographic research and analysis. In American Geophysical Union (Vol. Fall Meeting).
Abstract: Before complex analysis of oceanographic or any earth science data can occur, it must be placed in the proper domain of computing and software resources. In the past this was nearly always the scientist's personal computer or institutional computer servers. The problem with this approach is that it is necessary to bring the data products directly to these compute resources leading to large data transfers and storage requirements especially for high volume satellite or model datasets. In this presentation we will present a new technological solution under development and implementation at the NASA Jet Propulsion Laboratory for conducting oceanographic and related research based on satellite data and other sources. Fundamentally, our approach for satellite resources is to tile (partition) the data inputs into cloud-optimized and computation friendly databases that allow distributed computing resources to perform on demand and server-side computation and data analytics. This technology, known as NEXUS, has already been implemented in several existing NASA data portals to support oceanographic, sea-level, and gravity data time series analysis with capabilities to output time-average maps, correlation maps, Hovmöller plots, climatological averages and more. A further extension of this technology will integrate ocean in situ observations, event-based data discovery (e.g., natural disasters), data quality screening and additional capabilities. This particular activity is an open source project known as the Apache Science Data Analytics Platform (SDAP) (https://sdap.apache.org), and colloquially as OceanWorks, and is funded by the NASA AIST program. It harmonizes data, tools and computational resources for the researcher allowing them to focus on research results and hypothesis testing, and not be concerned with security, data preparation and management. We will present a few oceanographic and interdisciplinary use cases demonstrating the capabilities for characterizing regional sea-level rise, sea surface temperature anomalies, and ocean hurricane responses.
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Kelly, T. B., Goericke, R., Kahru, M., Song, H., & Stukel, M. R. (2018). CCE II: Spatial and interannual variability in export efficiency and the biological pump in an eastern boundary current upwelling system with substantial lateral advection. Deep Sea Research Part I: Oceanographic Research Papers, 140, 14–25.
Abstract: Estimating interannual variability in carbon export is a key goal of many marine biogeochemical studies. However, due to variations in export mechanisms between regions, generalized models used to estimate global patterns in export often fail when used for intra-regional analysis. We present here a region-specific model of export production for the California Current Ecosystem (CCE) parameterized using intensive Lagrangian process studies conducted during El Niño-Southern Oscillation (ENSO) warm and neutral phases by the CCE Long-Term Ecological Research (LTER) program. We find that, contrary to expectations from prominent global algorithms, export efficiency (e-ratio = export / primary productivity) is positively correlated with temperature and negatively correlated with net primary productivity (NPP). We attribute these results to the substantial horizontal advection found within the region, and verify this assumption by using a Lagrangian particle tracking model to estimate water mass age. We further suggest that sinking particles in the CCE are comprised of a recently-produced, rapidly-sinking component (likely mesozooplankton fecal pellets) and a longer-lived, slowly-sinking component that is likely advected long distances prior to export. We determine a new algorithm for estimating particle export in the CCE from NPP (Export = 0.08 · NPP + 72 mg C m-2 d-1). We apply this algorithm to a two-decade long time series of NPP in the CCE to estimate spatial and interannual variability across multiple ENSO phases. Reduced export during the warm anomaly of 2014-2015 and El Niño 2015-2016 resulted primarily from decreased export in the coastal upwelling region of the CCE; the oligotrophic offshore region exhibited comparatively low seasonal and interannual variability in flux. The model resolves intra-regional patterns of in situ export measurements, and provides a valuable contrast to global export models.
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Kelly, T. B., Goericke, R., Kahru, M., Song, H., & Stukel, M. R. (2018). CCE II: Spatial and interannual variability in export efficiency and the biological pump in an eastern boundary current upwelling system with substantial lateral advection. Deep Sea Research Part I: Oceanographic Research Papers, 140, 14–25.
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Deng, J., Wu, Z., Zhang, M., Huang, N. E., Wang, S., & Qiao, F. (2018). Using Holo-Hilbert spectral analysis to quantify the modulation of Dansgaard-Oeschger events by obliquity. Quaternary Science Reviews, 192, 282–299.
Abstract: Astronomical forcing (obliquity and precession) has been thought to modulate Dansgaard-Oeschger (DO) events, yet the detailed quantification of such modulations has not been examined. In this study, we apply the novel Holo-Hilbert Spectral Analysis (HHSA) to five polar ice core records, quantifying astronomical forcing's time-varying amplitude modulation of DO events and identifying the preferred obliquity phases for large amplitude modulations. The unique advantages of HHSA over the widely used windowed Fourier spectral analysis for quantifying astronomical forcing's nonlinear modulations of DO events is first demonstrated with a synthetic data that closely resembles DO events recorded in Greenland ice cores (NGRIP, GRIP, and GISP2 cores on GICC05 modelext timescale). The analysis of paleoclimatic proxies show that statistically significantly more frequent DO events, with larger amplitude modulation in the Greenland region, tend to occur in the decreasing phase of obliquity, especially from its mean value to its minimum value. In the eastern Antarctic, although statistically significantly more DO events tend to occur in the decreasing obliquity phase in general, the preferred phase of obliquity for large amplitude modulation on DO events is a segment of the increasing phase near the maximum obliquity, implying that the physical mechanisms of DO events may be different for the two polar regions. Additionally, by using cross-spectrum and magnitude-squared analyses, Greenland DO mode at a timescale of about 1400 years leads the Antarctic DO mode at the same timescale by about 1000 years. (C) 2018 Elsevier Ltd. All rights reserved.
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Misra, V., Selman, C., Waite, A. J., Bastola, S., & Mishra, A. (2017). Terrestrial and Ocean Climate of the 20th Century. In E. P. Chassignet, J. W. Jones, V. Misra, & J. Obeysekera (Eds.), Florida's climate: Changes, variations, & impacts (pp. 485–509). Gainesville, FL: Florida Climate Institute.
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Stukel, M. R., Biard, T., Krause, J. W., & Ohman, M. D. (2018). Large Phaeodaria in the twilight zone: Their role in the carbon cycle. Association for the Sciences of Limnology and Oceanography, .
Abstract: Advances in in situ imaging allow enumeration of abundant populations of large Rhizarians that compose a substantial proportion of total mesozooplankton biovolume. Using a quasi-Lagrangian sampling scheme, we quantified the abundance, vertical distributions, and sinking‐related mortality of Aulosphaeridae, an abundant family of Phaeodaria in the California Current Ecosystem. Inter‐cruise variability was high, with average concentrations at the depth of maximum abundance ranging from < 10 to > 300 cells m−3, with seasonal and interannual variability associated with temperature‐preferences and regional shoaling of the 10°C isotherm. Vertical profiles showed that these organisms were consistently most abundant at 100�150 m depth. Average turnover times with respect to sinking were 4.7�10.9 d, equating to minimum in situ population growth rates of ~ 0.1�0.2 d−1. Using simultaneous measurements of sinking organic carbon, we find that these organisms could only meet their carbon demand if their carbon : volume ratio were ~ 1 μg C mm−3. This value is substantially lower than previously used in global estimates of rhizarian biomass, but is reasonable for organisms that use large siliceous tests to inflate their cross‐sectional area without a concomitant increase in biomass. We found that Aulosphaeridae alone can intercept > 20% of sinking particles produced in the euphotic zone before these particles reach a depth of 300 m. Our results suggest that the local (and likely global) carbon biomass of Aulosphaeridae, and probably the large Rhizaria overall, needs to be revised downwards, but that these organisms nevertheless play a major role in carbon flux attenuation in the twilight zone.
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Stukel, M. R., Décima, M., Landry, M. R., & Selph, K. E. (2018). Nitrogen and isotope flows through the Costa Rica Dome upwelling ecosystem: The crucial mesozooplankton role in export flux. Global Biogeochemical Cycles, 32(12), 1815–1832.
Abstract: The Costa Rica Dome (CRD) is an open-ocean upwelling ecosystem, with high biomasses of picophytoplankton (especially Synechococcus), mesozooplankton, and higher trophic levels. To elucidate the food web pathways supporting the trophic structure and carbon export in this unique ecosystem, we used Markov Chain Monte Carlo techniques to assimilate data from four independent realizations of δ15N and planktonic rate measurements from the CRD into steady state, multicompartment ecosystem box models (linear inverse models). Model results present well-constrained snapshots of ecosystem nitrogen and stable isotope fluxes. New production is supported by upwelled nitrate, not nitrogen fixation. Protistivory (rather than herbivory) was the most important feeding mode for mesozooplankton, which rely heavily on microzooplankton prey. Mesozooplankton play a central role in vertical nitrogen export, primarily through active transport of nitrogen consumed in the surface layer and excreted at depth, which comprised an average 36-46% of total export. Detritus or aggregate feeding is also an important mode of resource acquisition by mesozooplankton and regeneration of nutrients within the euphotic zone. As a consequence, the ratio of passively sinking particle export to phytoplankton production is very low in the CRD. Comparisons to similar models constrained with data from the nearby equatorial Pacific demonstrate that the dominant role of vertical migrators to the biological pump is a unique feature of the CRD. However, both regions show efficient nitrogen transfer from mesozooplankton to higher trophic levels (as expected for regions with large fish, cetacean, and seabird populations) despite the dominance of protists as major grazers of phytoplankton.
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Stukel, M. R., Aluwihare, L. I., Barbeau, K. A., Chekalyuk, A. M., Goericke, R., Miller, A. J., et al. (2017). Mesoscale ocean fronts enhance carbon export due to gravitational sinking and subduction. Proc Natl Acad Sci U S A, 114(6), 1252–1257.
Abstract: Enhanced vertical carbon transport (gravitational sinking and subduction) at mesoscale ocean fronts may explain the demonstrated imbalance of new production and sinking particle export in coastal upwelling ecosystems. Based on flux assessments from 238U:234Th disequilibrium and sediment traps, we found 2 to 3 times higher rates of gravitational particle export near a deep-water front (305 mg Cm-2d-1) compared with adjacent water or to mean (nonfrontal) regional conditions. Elevated particle flux at the front was mechanistically linked to Fe-stressed diatoms and high mesozooplankton fecal pellet production. Using a data assimilative regional ocean model fit to measured conditions, we estimate that an additional approximately 225 mg Cm-2d-1 was exported as subduction of particle-rich water at the front, highlighting a transport mechanism that is not captured by sediment traps and is poorly quantified by most models and in situ measurements. Mesoscale fronts may be responsible for over a quarter of total organic carbon sequestration in the California Current and other coastal upwelling ecosystems.
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Maue, R. N. (2004). Evolution of Frontal Structure Associated with Extratropical Transitioning Hurricanes. Master's thesis, Florida State University, Tallahassee, FL.
Abstract: Many tropical cyclones move poleward, encounter vertical shear associated with the midlatitude circulation, and undergo a process called extratropical transition (ET). One of the many factors affecting the post-transition extratropical storm in terms of reintensification, frontal structure, and overall evolution is the upper-level flow pattern. Schultz et al. (1998) categorized extratropical cyclones according to two of the many possible cyclone paradigms in terms of the upper-level trough configuration: The Norwegian cyclone model (Bjerknes and Solberg 1922) associated with high-amplitude diffluent trough flow and the Shapiro-Keyser cyclone lifecycle (1990) with low-amplitude confluent troughs. Broadly speaking, the former category is associated with a strong, meridionally oriented cold front with a weak warm front while the latter lifecycle usually entails a prominent, zonally oriented warm front. However, as will be shown, simple antipode lifecycle definitions fail to capture hybrid or cross-lifecycle evolution of transitioned tropical cyclones. To exemplify the importance upper-level features such as jet streaks and troughs, a potential vorticity framework is coupled with vector frontogenesis functions to diagnose the interaction between the poleward transitioning cyclone and the midlatitude circulation. Particular focus is concentrated upon the evolution and strength of frontal fracture from both a PV and frontogenesis viewpoint. The final outcome of extratropical transition is highly variable depending on characteristics of the tropical cyclone, SSTs, and environmental factors such as strength of vertical shear. Here, three storms (Irene 1999, Fabian 2003, and Kate 2003) typify the inherent variability of one such ET outcome, warm seclusion. Very strong winds are often observed in excess of 50 ms-1 along the southwestern flank of the storm down the bent-back warm front. The low-level wind field kinematics are examined using vector frontogenesis functions and QuikSCAT winds. A complex empirical orthogonal function (CEOF) technique is adapted to temporally interpolate ECMWF model fields (T, MSLP) to overpass times of the scatterometer, an improvement over simple linear interpolation. Overall, the above diagnosis is used to support a hypothesis concerning the prevalence of hurricane-force winds surrounding secluded systems.
Keywords: Extratropical Transition, Frontogenesis, Fronts, Quikscat, Cyclone Lifecycles, Warm Seclusion, Frontal Fracture, Potential Vorticity, Hurricane Kate, Hurricane Irene, Hurricane Fabian, Tropical Cyclones
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Chen, X., Zhang, Y., Zhang, M., Feng, Y., Wu, Z., Qiao, F., et al. (2013). Intercomparison between observed and simulated variability in global ocean heat content using empirical mode decomposition, part I: modulated annual cycle. Clim Dyn, 41(11-12), 2797–2815.
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