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Author Shropshire, T.; Morey, S. L.; Chassignet, E. P.; Bozec, A.; Coles, V.J.; Landry, M.R.; Swalethorp, R.; Zapfe, G. and Stukel, M.R.
Title Quantifying spatiotemporal variability in zooplankton dynamics in the Gulf of Mexico with a physical-biogeochemical model Type $loc['typeJournal Article']
Year 2019 Publication Abbreviated Journal
Volume Issue Pages
Keywords
Abstract Zooplankton play an important role in global biogeochemistry and their secondary production supports valuable fisheries of the world's oceans. Currently, zooplankton abundances cannot be estimated using remote sensing techniques. Hence, coupled physical-biogeochemical models (PBMs) provide an important tool for studying zooplankton on regional and global scales. However, evaluating the accuracy of zooplankton abundance estimates from PBMs has been a major challenge as a result of sparse observations. In this study, we configure a PBM for the Gulf of Mexico (GoM) from 1993&#65533;2012 and validate the model against an extensive combination of in situ biomass and rate measurements including total mesozooplankton biomass, size-fractionated mesozooplankton biomass and grazing rates, microzooplankton specific grazing rates, surface chlorophyll, deep chlorophyll maximum depth, phytoplankton specific growth rates, and net primary production. Spatial variability in mesozooplankton biomass climatology observed in a multi-decadal database for the northern GoM is well resolved by the model with a statistically significant (p&#8201;<&#8201;0.01) correlation of 0.90. Mesozooplankton secondary production for the region averaged 66&#8201;+&#8201;8&#8201;mt&#8201;C&#8201;yr&#8722;1 equivalent to approximately 10&#8201;% of NPP and ranged from 51 to 82&#8201;mt&#8201;C&#8201;yr&#8722;1. In terms of diet, model results from the shelf regions suggest that herbivory is the dominant feeding mode for small mesozooplankton (<&#8201;1-mm) whereas larger mesozooplankton are primarily carnivorous. However, in open-ocean, oligotrophic regions, both groups of mesozooplankton have proportionally greater reliance on heterotrophic protists as a food source. This highlights the important role of microbial and protistan food webs in sustaining mesozooplankton biomass in the GoM which serves as the primary food source for early life stages of many commercially-important fish species, including tuna.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference
Funding Approved $loc['no']
Call Number COAPS @ user @ Serial 1095
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Author Smith, S.R.; Alory, G.; Andersson, A.; Asher, W.; Baker, A.; Berry, D.I.; Drushka, K.; Figurskey, D.; Freeman, E.; Holthus, P.; Jickells, T.; Kleta, H.; Kent, E.C.; Kolodziejczyk, N.; Kramp, M.; Loh, Z.; Poli, P.; Schuster, U.; Steventon, E.; Swart, S.; Tarasova, O.; de la Villéon, L.P.; Vinogradova-Shiffer, N.
Title Ship-Based Contributions to Global Ocean, Weather, and Climate Observing Systems Type $loc['typeJournal Article']
Year 2019 Publication Frontiers in Marine Science Abbreviated Journal Front. Mar. Sci.
Volume 6 Issue Pages 434
Keywords
Abstract The role ships play in atmospheric, oceanic, and biogeochemical observations is described with a focus on measurements made near the ocean surface. Ships include merchant and research vessels; cruise liners and ferries; fishing vessels; coast guard, military, and other government-operated ships; yachts; and a growing fleet of automated surface vessels. The present capabilities of ships to measure essential climate/ocean variables and the requirements from a broad community to address operational, commercial, and scientific needs are described. The authors provide a vision to expand observations needed from ships to understand and forecast the exchanges across the ocean–atmosphere interface. The vision addresses (1) recruiting vessels to improve both spatial and temporal sampling, (2) conducting multivariate sampling on ships, (3) raising technology readiness levels of automated shipboard sensors and ship-to-shore data communications, (4) advancing quality evaluation of observations, and (5) developing a unified data management approach for observations and metadata that meet the needs of a diverse user community. Recommendations are made focusing on integrating private and autonomous vessels into the observing system, investing in sensor and communications technology development, developing an integrated data management structure that includes all types of ships, and moving toward a quality evaluation process that will result in a subset of ships being defined as mobile reference ships that will support climate studies. We envision a future where commercial, research, and privately owned vessels are making multivariate observations using a combination of automated and human-observed measurements. All data and metadata will be documented, tracked, evaluated, distributed, and archived to benefit users of marine data. This vision looks at ships as a holistic network, not a set of disparate commercial, research, and/or third-party activities working in isolation, to bring these communities together for the mutual benefit of all.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 2296-7745 ISBN Medium
Area Expedition Conference
Funding Approved $loc['no']
Call Number COAPS @ user @ Serial 1039
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Author Stukel, M.R.; Kelly, T.B.
Title The carbon: (234) Thorium ratios of sinking particles in the California current ecosystem 2: Examination of a thorium sorption, desorption, and particle transport model Type $loc['typeJournal Article']
Year 2019 Publication Marine Chemistry Abbreviated Journal Marine Chemistry
Volume 212 Issue Pages 1-15
Keywords POC concentration; sinking particles.; depth and relationship with water; phytoplankton
Abstract Thorium-234 (234Th) is a powerful tracer of particle dynamics and the biological pump in the surface ocean; however, variability in carbon: thorium ratios of sinking particles adds substantial uncertainty to estimates of organic carbon export. We coupled a mechanistic thorium sorption and desorption model to a one-dimensional particle sinking model that uses realistic particle settling velocity spectra. The model generates estimates of 238U234Th disequilibrium, particulate organic carbon concentration, and the C:234Th ratio of sinking particles, which are then compared to in situ measurements from quasi-Lagrangian studies conducted on six cruises in the California Current Ecosystem. Broad patterns observed in in situ measurements, including decreasing C:234Th ratios with depth and a strong correlation between sinking C:234Th and the ratio of vertically-integrated particulate organic carbon (POC) to vertically-integrated total water column 234Th, were accurately recovered by models assuming either a power law distribution of sinking speeds or a double log normal distribution of sinking speeds. Simulations suggested that the observed decrease in C:234Th with depth may be driven by preferential remineralization of carbon by particle-attached microbes. However, an alternate model structure featuring complete consumption and/or disaggregation of particles by mesozooplankton (e.g. no preferential remineralization of carbon) was also able to simulate decreasing C:234Th with depth (although the decrease was weaker), driven by 234Th adsorption onto slowly sinking particles. Model results also suggest that during bloom decays C:234Th ratios of sinking particles should be higher than expected (based on contemporaneous water column POC), because high settling velocities minimize carbon remineralization during sinking.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0304-4203 ISBN Medium
Area Expedition Conference
Funding Approved $loc['no']
Call Number COAPS @ user @ Serial 1002
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Author Stukel, M.R.; Ohman, M.D.; Kelly, T.B.; Biard, T.
Title The Roles of Suspension-Feeding and Flux-Feeding Zooplankton as Gatekeepers of Particle Flux Into the Mesopelagic Ocean in the Northeast Pacific Type $loc['typeJournal Article']
Year 2019 Publication Frontiers in Marine Science Abbreviated Journal Front. Mar. Sci.
Volume 6 Issue Pages
Keywords biological pump; carbon export; remineralization length scale; mesozooplankton ecology; pteropods; marine biogeochemistry; sinking particles; marine snow
Abstract Zooplankton are important consumers of sinking particles in the ocean's twilight zone. However, the impact of different taxa depends on their feeding mode. In contrast to typical suspension-feeding zooplankton, flux-feeding taxa preferentially consume rapidly sinking particles that would otherwise penetrate into the deep ocean. To quantify the potential impact of two flux-feeding zooplankton taxa [Aulosphaeridae (Rhizaria), and Limacina helicina (euthecosome pteropod)] and the total suspension-feeding zooplankton community, we measured depth-stratified abundances of these organisms during six cruises in the California Current Ecosystem. Using allometric-scaling relationships, we computed the percentage of carbon flux intercepted by flux feeders and suspension feeders. These estimates were compared to direct measurements of carbon flux attenuation (CFA) made using drifting sediment traps and U-238-Th-234 disequilibrium. We found that CFA in the shallow twilight zone typically ranged from 500 to 1000 m mol organic C flux remineralized per 10-m vertical depth bin. This equated to approximately 6-10% of carbon flux remineralized/10 m. The two flux-feeding taxa considered in this study could account for a substantial proportion of this flux near the base of the euphotic zone. The mean flux attenuation attributable to Aulosphaeridae was 0.69%/10 m (median = 0.21%/10 m, interquartile range = 0.04-0.81%) at their depth of maximum abundance (similar to 100 m), which would equate to similar to 10% of total flux attenuation in this depth range. The maximum flux attenuation attributable to Aulosphaeridae reached 4.2%/10 m when these protists were most abundant. L. helicina, meanwhile, could intercept 0.45-1.6% of carbon flux/10 m, which was slightly greater (on average) than the Aulosphaeridae. In contrast, suspension-feeding zooplankton in the mesopelagic (including copepods, euphausiids, appendicularians, and ostracods) had combined clearance rates of 2-81 L m(-3) day(-1) (mean of 19.6 L m(-3) day(-1)). This implies a substantial impact on slowly sinking particles, but a negligible impact on the presumably rapidly sinking fecal pellets that comprised the majority of the material collected in sediment traps. Our results highlight the need for a greater research focus on the many taxa that potentially act as flux feeders in the oceanic twilight zone.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 2296-7745 ISBN Medium
Area Expedition Conference
Funding Approved $loc['no']
Call Number COAPS @ user @ Serial 1066
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Author Sun, J.; Wu, Z.
Title Isolating spatiotemporally local mixed Rossby-gravity waves using multi-dimensional ensemble empirical mode decomposition Type $loc['typeJournal Article']
Year 2019 Publication Climate Dynamics Abbreviated Journal Clim Dyn
Volume Issue 3-4 Pages 1383-1405
Keywords
Abstract Tropical waves have relatively large amplitudes in and near convective systems, attenuating as they propagate away from the area where they are generated due to the dissipative nature of the atmosphere. Traditionally, nonlocal analysis methods, such as those based on the Fourier transform, are applied to identify tropical waves. However, these methods have the potential to lead to the misidentification of local wavenumbers and spatial locations of local wave activities. To address this problem, we propose a new method for analyzing tropical waves, with particular focus placed on equatorial mixed Rossby-gravity (MRG) waves. The new tropical wave analysis method is based on the multi-dimensional ensemble empirical mode decomposition and a novel spectral representation based on spatiotemporally local wavenumber, frequency, and amplitude of waves. We first apply this new method to synthetic data to demonstrate the advantages of the method in revealing characteristics of MRG waves. We further apply the method to reanalysis data (1) to identify and isolate the spatiotemporally heterogeneous MRG waves event by event, and (2) to quantify the spatial inhomogeneity of these waves in a wavenumber-frequency-energy diagram. In this way, we reveal the climatology of spatiotemporal inhomogeneity of MRG waves and summarize it in wavenumber-frequency domain: The Indian Ocean is dominated by MRG waves in the period range of 8–12 days; the western Pacific Ocean consists of almost equal energy distribution of MRG waves in the period ranges of 3–6 and 8–12 days, respectively; and the eastern tropical Pacific Ocean and the tropical Atlantic Ocean are dominated by MRG waves in the period range of 3–6 days. The zonal wavenumbers mostly fall within the band of 4–15, with Indian Ocean has larger portion of higher wavenumber (smaller wavelength components) MRG waves.
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Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 0930-7575 ISBN Medium
Area Expedition Conference
Funding Approved $loc['no']
Call Number COAPS @ user @ Serial 1093
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Author Timko, P.G.; Arbic, B.K.; Hyder, P.; Richman, J.G.; Zamudio, L.; O'Dea, E.; Wallcraft, A.J.; Shriver, J.F.
Title Assessment of shelf sea tides and tidal mixing fronts in a global ocean model Type $loc['typeJournal Article']
Year 2019 Publication Ocean Modelling Abbreviated Journal Ocean Modelling
Volume 136 Issue Pages 66-84
Keywords HYCOM; tides; seasonal tidal mixing
Abstract Tidal mixing fronts, which represent boundaries between stratified and tidally mixed waters, are locations of enhanced biological activity. They occur in summer shelf seas when, in the presence of strong tidal currents, mixing due to bottom friction balances buoyancy production due to seasonal heat flux. In this paper we examine the occurrence and fidelity of tidal mixing fronts in shelf seas generated within a global 3-dimensional simulation of the HYbrid Coordinate Ocean Model (HYCOM) that is simultaneously forced by atmospheric fields and the astronomical tidal potential. We perform a first order assessment of shelf sea tides in global HYCOM through comparison of sea surface temperature, sea surface tidal elevations, and tidal currents with observations. HYCOM was tuned to minimize errors in M2 sea surface heights in deep water. Over the global coastal and shelf seas (depths <200&#8239;m) the area-weighted root mean square error of the M2 sea surface amplitude in HYCOM represents 35% of the 50&#8239;cm root mean squared M2 sea surface amplitude when compared to satellite constrained models TPXO8 and FES2014. HYCOM and the altimeter constrained tidal models TPXO8 and FES2014 exhibit similar skill in reproducing barotropic tidal currents estimated from in-situ current meter observations. Through comparison of a global HYCOM simulation with tidal forcing to a global HYCOM simulation with no tides, and also to previous regional studies of tidal mixing fronts in shelf seas, we demonstrate that HYCOM with embedded tides exhibits quite high skill in reproducing known tidal mixing fronts in shelf seas. Our results indicate that the amount of variability in the location of the tidal mixing fronts in HYCOM, estimated using the Simpson-Hunter parameter, is consistent with previous studies when the differences in the net downward heat flux, on a global scale, are taken into account. We also provide evidence of tidal mixing fronts on the North West Australian Shelf for which we have been unable to find references in the existing scientific literature.
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Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1463-5003 ISBN Medium
Area Expedition Conference
Funding Approved $loc['no']
Call Number COAPS @ user @ Serial 1032
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Author Villas Bôas, A.B.; Ardhuin, F.; Ayet, A.; Bourassa, M.A.; Brandt, P.; Chapron, B.; Cornuelle, B.D.; Farrar, J.T.; Fewings, M.R.; Fox-Kemper, B.; Gille, S.T.; Gommenginger, C.; Heimbach, P.; Hell, M.C.; Li, Q.; Mazloff, M.R.; Merrifield, S.T.; Mouche, A.; Rio, M.H.; Rodriguez, E.; Shutler, J.D.; Subramanian, A.C.; Terrill, E.J.; Tsamados, M.; Ubelmann, C.; van Sebille, E.
Title Integrated Observations of Global Surface Winds, Currents, and Waves: Requirements and Challenges for the Next Decade Type $loc['typeJournal Article']
Year 2019 Publication Frontiers in Marine Science Abbreviated Journal Front. Mar. Sci.
Volume 6 Issue Pages
Keywords
Abstract Ocean surface winds, currents, and waves play a crucial role in exchanges of momentum, energy, heat, freshwater, gases, and other tracers between the ocean, atmosphere, and ice. Despite surface waves being strongly coupled to the upper ocean circulation and the overlying atmosphere, efforts to improve ocean, atmospheric, and wave observations and models have evolved somewhat independently. From an observational point of view, community efforts to bridge this gap have led to proposals for satellite Doppler oceanography mission concepts, which could provide unprecedented measurements of absolute surface velocity and directional wave spectrum at global scales. This paper reviews the present state of observations of surface winds, currents, and waves, and it outlines observational gaps that limit our current understanding of coupled processes that happen at the air-sea-ice interface. A significant challenge for the coming decade of wind, current, and wave observations will come in combining and interpreting measurements from (a) wave-buoys and high-frequency radars in coastal regions, (b) surface drifters and wave-enabled drifters in the open-ocean, marginal ice zones, and wave-current interaction &#65533;hot-spots,&#65533; and (c) simultaneous measurements of absolute surface currents, ocean surface wind vector, and directional wave spectrum from Doppler satellite sensors.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 2296-7745 ISBN Medium
Area Expedition Conference
Funding Approved $loc['no']
Call Number COAPS @ user @ Serial 1064
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Author Xiaobiao Xu, Eric Chassignet
Title Subpolar-Subtropical Connectivity of the North Atlantic Circulation Type $loc['typeMiscellaneous']
Year 2019 Publication PHYSICAL OCEANOGRAPHY Abbreviated Journal
Volume Issue Pages
Keywords Warming, hydrographic, subtropical gyres, sub-basins, passive tracers
Abstract The ocean, through its large capacity to store heat, plays a critical role in Earth's climate and climate variability. Warming of the world's oceans since 1955 accounts for approximately 93% of the warming of the Earth system. However, this warming is neither spatially uniform nor temporally constant. Superimposed on the global long-term trend is climate variability on inter-annual to inter-decadal time scales and regional to basin scales. Satellite altimeters and hydrographic observations show that the North Atlantic, including the sub-polar region, has rapidly become warmer and saltier since the early 1990s. An emerging picture is that the most recent 20 years or so of warming in the North Atlantic represents, in part, a transition of the Atlantic multi-decadal variability pattern from a cold to a warm phase. These decadal climate transitions involve changes both laterally in the sub-tropical and sub-polar gyres of the North Atlantic and vertically in the Atlantic Meridional Overturning Circulation (AMOC), a key component of the global heat and freshwater circulation system. This study of the North Atlantic circulation concentrates on a transition region around the Grand Banks of Newfoundland, where the effects of boundary currents and jets, recirculations, and mesoscale eddies (length scales typically less than 100 km) are dominant. Strong interactions occur in this transition region, laterally between the subpolar and subtropical gyres and vertically between the cold and warm limbs of the Atlantic Meridional Circulation (AMOC). There is evidence that this relatively compact region plays a key role in altering and even modulating the AMOC over a much larger scale and thus is important for the long-term, decadal variability of the Atlantic Ocean. Yet, despite many observational field programs, the dynamics and impacts of this region are not well understood. The project will contribute to understanding the variability of the AMOC by addressing the connectivity of the sub-polar and the sub-tropical gyres. The results of this model-data synthesis will be of particular significance to coupled climate models, which are central to understanding and predicting global climate change. The educational/outreach components of this project will be focused on cultivating scientific literacy with regards to ocean climate research in K-12 schools, at the university level, and in the local community through a variety of online resources/interactive tools for educators, the Florida State University Young Scholars program for high school students, and the “Scientists in the Schools” program. Finally, the requested funding will support a junior faculty member and a graduate student who will be trained in ocean modeling, data analysis and interpretation.

Through ongoing major observation programs in the sub-polar and sub-tropical North Atlantic Ocean, oceanographers are making great strides toward a better understanding of the structure and variability of the AMOC within these sub-basins. The work proposed here complements these observations by focusing on key questions pertaining to what controls the circulation in between and how much the sub-polar to sub-tropical connectivity modulates the larger scale AMOC. This project aims to elucidate the physical dynamics that controls circulation in the transition region, especially the relative importance of the eddies and the deep western boundary current, and document the role and impact of the transition region on the larger scale circulation, especially the variability of the AMOC and water properties in the sub-polar and sub-tropical North Atlantic from inter-annual to decadal and longer time scales. The interaction of eddies and time mean circulations represents one of the greatest challenges to prediction of global climate variability, and it can be studied with the fine-grid resolution model included in this project. These objectives will be met by performing a detailed model-data synthesis study, combining numerical results from a suite of high-resolution Atlantic simulations using the HYbrid Coordinate Ocean Model (HYCOM) and existing observations (satellite altimetry, drifters/floats, hydrography, tracers, and mooring arrays). The three-dimensional Atlantic circulation will be quantified by performing analysis of water mass transport and transformation, passive tracers, and potential vorticity and momentum fluxes. It has been demonstrated that the eddy-resolving HYCOM represents the basic circulation features in the transition region and larger scale North Atlantic Ocean, including both time mean structure and temporal variability.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference
Funding Approved $loc['no']
Call Number COAPS @ user @ Serial 1018
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Author Yu, B.; Seed, A.; Pu, L.; Malone, T.
Title Integration of weather radar data into a raster GIS framework for improved flood estimation Type $loc['typeJournal Article']
Year 2019 Publication Atmospheric Science Letters Abbreviated Journal Atmos. Sci. Lett.
Volume 6 Issue 1 Pages
Keywords
Abstract We present in this paper the interannual variability of seasonal temperature and rainfall in the Indian meteorological subdivisions (IMS) for boreal winter and summer seasons that take in to account the varying length of the seasons.Our study reveals that accounting for the variations in the length of the sea-sons produces stronger teleconnections between the seasonal anomalies of surface temperature and rainfall over India with corresponding sea surface temperature anomalies of the tropical Oceans (especially over the northern Indian and the equatorial Pacific Oceans) compared to the same teleconnections from fixed length seasons over the IMS. It should be noted that the IMS show significant spatial heterogeneity in these teleconnections
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN 1530-261X ISBN Medium
Area Expedition Conference
Funding Approved $loc['no']
Call Number COAPS @ user @ Serial 1069
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Author Zhao, X.; Zhou, C.; Xu, X.; Ye, R.; Tian, J.; Zhao, W.
Title Deep Circulation in the South China Sea Simulated in a Regional Model Type $loc['typeJournal Article']
Year 2019 Publication Ocean Sci. Discuss Abbreviated Journal Ocean Sci. Discuss
Volume Issue Pages
Keywords Sea Marine, Oceanography/CIMST, PacificOcean, continuous current-meter, deep circulation, deep western boundary
Abstract The South China Sea (SCS) is the largest marginal sea in the northwest Pacific Ocean. In this study, deep circulation in the SCS is investigated using results from eddy-resolving, regional simulations using the Hybrid Coordinate Ocean Model (HYCOM) verified by continuous current-meter observations. Analysis of these results provides a detailed spatial structure and temporal variability of the deep circulation in the SCS. The major features of the SCS deep circulation are a basin-scale cyclonic gyre and a concentrated deep western boundary current (DWBC). Transport of the DWBC is &#8764;&#8201;2&#8201;Sv at 16.5°&#8201;N with a width of &#8764;53&#8201;km. Flowing southwestward, the narrow DWBC becomes weaker with a wider range. The model results reveal the existence of 80- to 120-day oscillation in the deep northeastern circulation and the DWBC, which are also the areas with elevated eddy kinetic energy. This intraseasonal oscillation propagates northwestward with a velocity amplitude of &#8764;&#8201;1.0 to 1.5&#8201;cm&#8201;s-1. The distribution of mixing parameters in the deep SCS plays a role in both spatial structure and volume transport of the deep circulation. Compared with the northern shelf of the SCS with the Luzon Strait, deep circulation in the SCS is more sensitive to the large vertical mixing parameters of the Zhongsha Island Chain area.
Address
Corporate Author Thesis
Publisher Place of Publication Editor
Language Summary Language Original Title
Series Editor Series Title Abbreviated Series Title
Series Volume Series Issue Edition
ISSN ISBN Medium
Area Expedition Conference
Funding Approved $loc['no']
Call Number COAPS @ user @ Serial 1013
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