Brzezinski, M. A., Krause, J. W., Bundy, R. M., Barbeau, K. A., Franks, P., Goericke, R., et al. (2015). Enhanced silica ballasting from iron stress sustains carbon export in a frontal zone within the California Current. J. Geophys. Res. Oceans , 120 (7), 4654–4669.
Coles, V. J., Stukel, M. R., Brooks, M. T., Burd, A., Crump, B. C., Moran, M. A., et al. (2017). Ocean biogeochemistry modeled with emergent trait-based genomics. Science , 358 (6367), 1149–1154.
Coles, V. J., Stukel, M. R., Brooks, M. T., Burd, A., Crump, B. C., Moran, M. A., et al. (2017). Ocean biogeochemistry modeled with emergent trait-based genomics. Science , 358 (6367), 1149–1154.
Abstract: Marine ecosystem models have advanced to incorporate metabolic pathways discovered with genomic sequencing, but direct comparisons between models and “omics” data are lacking. We developed a model that directly simulates metagenomes and metatranscriptomes for comparison with observations. Model microbes were randomly assigned genes for specialized functions, and communities of 68 species were simulated in the Atlantic Ocean. Unfit organisms were replaced, and the model self-organized to develop community genomes and transcriptomes. Emergent communities from simulations that were initialized with different cohorts of randomly generated microbes all produced realistic vertical and horizontal ocean nutrient, genome, and transcriptome gradients. Thus, the library of gene functions available to the community, rather than the distribution of functions among specific organisms, drove community assembly and biogeochemical gradients in the model ocean.
Conroy, B. J., Steinberg, D. K., Stukel, M. R., Goes, J. I., & Coles, V. J. (2016). Meso- and microzooplankton grazing in the Amazon River plume and western tropical North Atlantic. Limnol. Oceanogr. , 61 (3), 825–840.
Decima, M., Landry, M. R., Stukel, M. R., Lopez-Lopez, L., & Krause, J. W. (2016). Mesozooplankton biomass and grazing in the Costa Rica Dome: amplifying variability through the plankton food web. J Plankton Res , 38 (2), 317–330.
Abstract: We investigated standing stocks and grazing rates of mesozooplankton assemblages in the Costa Rica Dome (CRD), an open-ocean upwelling ecosystem in the eastern tropical Pacific. While phytoplankton biomass in the CRD is dominated by picophytoplankton (<2-microm cells) with especially high concentrations of Synechococcus spp., we found high mesozooplankton biomass ( approximately 5 g dry weight m-2) and grazing impact (12-50% integrated water column chlorophyll a), indicative of efficient food web transfer from primary producers to higher levels. In contrast to the relative uniformity in water-column chlorophyll a and mesozooplankton biomass, variability in herbivory was substantial, with lower rates in the central dome region and higher rates in areas offset from the dome center. While grazing rates were unrelated to total phytoplankton, correlations with cyanobacteria (negative) and biogenic SiO2 production (positive) suggest that partitioning of primary production among phytoplankton sizes contributes to the variability observed in mesozooplankton metrics. We propose that advection of upwelled waters away from the dome center is accompanied by changes in mesozooplankton composition and grazing rates, reflecting small changes within the primary producers. Small changes within the phytoplankton community resulting in large changes in the mesozooplankton suggest that the variability in lower trophic level dynamics was effectively amplified through the food web.
Fender, C. K., Kelly, T. B., Guidi, L., Ohman, M. D., Smith, M. C., & Stukel, M. R. (2019). Investigating Particle Size-Flux Relationships and the Biological Pump Across a Range of Plankton Ecosystem States From Coastal to Oligotrophic. Front. Mar. Sci. , 6 .
Kelly, T. B., Goericke, R., Kahru, M., Song, H., & Stukel, M. R. (2018). CCE II: Spatial and interannual variability in export efficiency and the biological pump in an eastern boundary current upwelling system with substantial lateral advection. Deep Sea Research Part I: Oceanographic Research Papers , 140 , 14–25.
Abstract: Estimating interannual variability in carbon export is a key goal of many marine biogeochemical studies. However, due to variations in export mechanisms between regions, generalized models used to estimate global patterns in export often fail when used for intra-regional analysis. We present here a region-specific model of export production for the California Current Ecosystem (CCE) parameterized using intensive Lagrangian process studies conducted during El Niño-Southern Oscillation (ENSO) warm and neutral phases by the CCE Long-Term Ecological Research (LTER) program. We find that, contrary to expectations from prominent global algorithms, export efficiency (e-ratio = export / primary productivity) is positively correlated with temperature and negatively correlated with net primary productivity (NPP). We attribute these results to the substantial horizontal advection found within the region, and verify this assumption by using a Lagrangian particle tracking model to estimate water mass age. We further suggest that sinking particles in the CCE are comprised of a recently-produced, rapidly-sinking component (likely mesozooplankton fecal pellets) and a longer-lived, slowly-sinking component that is likely advected long distances prior to export. We determine a new algorithm for estimating particle export in the CCE from NPP (Export = 0.08 · NPP + 72 mg C m-2 d-1). We apply this algorithm to a two-decade long time series of NPP in the CCE to estimate spatial and interannual variability across multiple ENSO phases. Reduced export during the warm anomaly of 2014-2015 and El Niño 2015-2016 resulted primarily from decreased export in the coastal upwelling region of the CCE; the oligotrophic offshore region exhibited comparatively low seasonal and interannual variability in flux. The model resolves intra-regional patterns of in situ export measurements, and provides a valuable contrast to global export models.
Kelly, T. B., Goericke, R., Kahru, M., Song, H., & Stukel, M. R. (2018). CCE II: Spatial and interannual variability in export efficiency and the biological pump in an eastern boundary current upwelling system with substantial lateral advection. Deep Sea Research Part I: Oceanographic Research Papers , 140 , 14–25.
Kranz, S. A., Wang, S., Kelly, T. B., Stukel, M. R., Goericke, R., Landry, M. R., et al. (2020). Lagrangian Studies of Marine Production: A Multimethod Assessment of Productivity Relationships in the California Current Ecosystem Upwelling Region. J. Geophys. Res. Oceans , 125 (6).
Abstract: A multimethod process‐oriented investigation of diverse productivity measures in the California Current Ecosystem (CCE) Long‐Term Ecological Research study region, a complex physical environment, is presented. Seven multiday deployments covering a transition region from high to low productivity were conducted over two field expeditions (spring 2016 and summer 2017). Employing a Lagrangian study design, water parcels were followed over several days, comparing 24‐h in situ measurements (14C and 15NO3 ‐uptake, dilution estimates of phytoplankton growth, and microzooplankton grazing) with high‐resolution productivity measurements by fast repetition rate fluorometry (FRRF) and equilibrium inlet mass spectrometry (EIMS), and integrated carbon export measuremnts using sediment traps. Results show the importance of accounting for temporal and fine spatial scale variability when estimating ecosystem production. FRRF and EIMS measurements resolved diel patterns in gross primary and net community production. Diel productivity changes agreed well with comparably more traditional measurements. While differences in productivity metrics calculated over different time intervals were considerable, as those methods rely on different base assumptions, the data can be used to explain ecosystem processes which would otherwise have gone unnoticed. The processes resolved from this method comparison further understanding of temporal and spatial coupling and decoupling of surface productivity and potential carbon burial in a gradient from coastal to offshore ecosystems.
Krause, J. W., Stukel, M. R., Taylor, A. G., Taniguchi, D. A. A., De Verneil, A., & Landry, M. R. (2016). Net biogenic silica production and the contribution of diatoms to new production and organic matter export in the Costa Rica Dome ecosystem. J Plankton Res , 38 (2), 216–229.
Abstract: We determined the net rate of biogenic silica (bSiO2) production and estimated the diatom contribution to new production and organic matter export in the Costa Rica Dome during summer 2010. The shallow thermocline significantly reduces bSiO2 dissolution rates below the mixed layer, leading to significant enhancement of bSiO2 relative to organic matter (silicate-pump condition). This may explain why deep export of bSiO2 in this region is elevated by an order of magnitude relative to comparable systems. Diatom carbon, relative to autotrophic carbon, was low (<3%); however, the contribution of diatoms to new production averaged 3 and 13% using independent approaches. The 4-old discrepancy between methods may be explained by a low average C:Si ratio ( approximately 1.4) for the net produced diatom C relative to the net produced bSiO2. We speculate that this low production ratio is not the result of reduced C, but may arise from a significant contribution of non-diatom silicifying organisms to bSiO2 production. The contribution of diatoms to organic matter export was minor (5.7%). These results, and those of the broader project, suggest substantial food-web transformation of diatom organic matter in the euphotic zone, which creates enriched bSiO2 relative to organic matter within the exported material.