||Data presented are related to the research article entitled “Using Holo-Hilbert spectral analysis to quantify the modulation of Dansgaard-Oeschger events by obliquity” (J. Deng et al., 2018). The datasets in Deng et al. (2018) are analyzed on the foundation of ensemble empirical mode decomposition (EEMD) (Z.H. Wu and N.E. Huang, 2009), and reveal more occurrences of Dansgaard-Oeschger (DO) events in the decreasing phase of obliquity. Here, we report the number of significant high Shannon entropy (SE) (C.E. Shannon and W. Weaver, 1949) of 95% significance level of DO events in the increasing and decreasing phases of obliquity, respectively. First, the proxy time series are filtered by EEMD to obtain DO events. Then, the time-varying SE of DO modes are calculated on the basis of principle of histogram. The 95% significance level is evaluated through surrogate data (T. Schreiber and A. Schmitz, 1996). Finally, a comparison between the numbers of SE values that are larger than 95% significance level in the increasing and decreasing phases of obliquity, respectively, is reported.