Adams, D. K., McGillicuddy, D. J. J., Zamudio, L., Thurnherr, A. M., Liang, X., Rouxel, O., et al. (2011). Surface-generated mesoscale eddies transport deep-sea products from hydrothermal vents. Science , 332 (6029), 580–583.
Abstract: Atmospheric forcing, which is known to have a strong influence on surface ocean dynamics and production, is typically not considered in studies of the deep sea. Our observations and models demonstrate an unexpected influence of surface-generated mesoscale eddies in the transport of hydrothermal vent efflux and of vent larvae away from the northern East Pacific Rise. Transport by these deep-reaching eddies provides a mechanism for spreading the hydrothermal chemical and heat flux into the deep-ocean interior and for dispersing propagules hundreds of kilometers between isolated and ephemeral communities. Because the eddies interacting with the East Pacific Rise are formed seasonally and are sensitive to phenomena such as El Nino, they have the potential to introduce seasonal to interannual atmospheric variations into the deep sea.
Cocke, S., Boisserie, M., & Shin, D. - W. (2013). A coupled soil moisture initialization scheme for the FSU/COAPS climate model. Inverse Problems in Science and Engineering , 21 (3), 420–437.
Coles, V. J., Stukel, M. R., Brooks, M. T., Burd, A., Crump, B. C., Moran, M. A., et al. (2017). Ocean biogeochemistry modeled with emergent trait-based genomics. Science , 358 (6367), 1149–1154.
Coles, V. J., Stukel, M. R., Brooks, M. T., Burd, A., Crump, B. C., Moran, M. A., et al. (2017). Ocean biogeochemistry modeled with emergent trait-based genomics. Science , 358 (6367), 1149–1154.
Abstract: Marine ecosystem models have advanced to incorporate metabolic pathways discovered with genomic sequencing, but direct comparisons between models and “omics” data are lacking. We developed a model that directly simulates metagenomes and metatranscriptomes for comparison with observations. Model microbes were randomly assigned genes for specialized functions, and communities of 68 species were simulated in the Atlantic Ocean. Unfit organisms were replaced, and the model self-organized to develop community genomes and transcriptomes. Emergent communities from simulations that were initialized with different cohorts of randomly generated microbes all produced realistic vertical and horizontal ocean nutrient, genome, and transcriptome gradients. Thus, the library of gene functions available to the community, rather than the distribution of functions among specific organisms, drove community assembly and biogeochemical gradients in the model ocean.
Deng, J., Wu, Z., Zhang, M., Huang, N. E., Wang, S., & Qiao, F. (2018). Using Holo-Hilbert spectral analysis to quantify the modulation of Dansgaard-Oeschger events by obliquity. Quaternary Science Reviews , 192 , 282–299.
Abstract: Astronomical forcing (obliquity and precession) has been thought to modulate Dansgaard-Oeschger (DO) events, yet the detailed quantification of such modulations has not been examined. In this study, we apply the novel Holo-Hilbert Spectral Analysis (HHSA) to five polar ice core records, quantifying astronomical forcing's time-varying amplitude modulation of DO events and identifying the preferred obliquity phases for large amplitude modulations. The unique advantages of HHSA over the widely used windowed Fourier spectral analysis for quantifying astronomical forcing's nonlinear modulations of DO events is first demonstrated with a synthetic data that closely resembles DO events recorded in Greenland ice cores (NGRIP, GRIP, and GISP2 cores on GICC05 modelext timescale). The analysis of paleoclimatic proxies show that statistically significantly more frequent DO events, with larger amplitude modulation in the Greenland region, tend to occur in the decreasing phase of obliquity, especially from its mean value to its minimum value. In the eastern Antarctic, although statistically significantly more DO events tend to occur in the decreasing obliquity phase in general, the preferred phase of obliquity for large amplitude modulation on DO events is a segment of the increasing phase near the maximum obliquity, implying that the physical mechanisms of DO events may be different for the two polar regions. Additionally, by using cross-spectrum and magnitude-squared analyses, Greenland DO mode at a timescale of about 1400 years leads the Antarctic DO mode at the same timescale by about 1000 years. (C) 2018 Elsevier Ltd. All rights reserved.